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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatagtttttgtactaaatgcggatcattatttatatttacaaagatagtaagcttgcgtcttctctcttgcaacacaagatagttcttactagtttgatcgatcgccagGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAG

Basic information

species Arabidopsis thaliana
transcript AT5G56180.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56180.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G12490.1 (Glycine max), 3'ss of exon 3
----gtgagatagtttttgtactaaatgcggatcattatttatatttacaaagatagtaagcttgcgtcttctctcttgcaacacaagatagttcttactagtttgatcgatcgccagGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAG
       ||| ||   || | | | || |    ||||  || |  |      | |  | || || |     ||    |||| |         || |  ||  |||  | ||| | |||||||||||||| ||||||||||| || ||| |||| |||| ||| || |||||||| ||||  | |||
aaatagaagaaagcacttatgc-agatactaggcattgctttttct------gtttttcagtttccactcacttggctgcatc---------ttttccctccttt--ttgatgggcagGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034169|gb|AU236615.2|AU236615
EST:     TTGGTTGGAGCAAGTATGCGTCTCCTTCTGGACGTTCTGCTACTTTTTTG                         GAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTNA-CAGTTCTTT
genomic: TTGGTTGGAGCAAGTATGCGTCTCCTTCTGGACGTTCTGCTACTTTTTTGgtgagatagt ... cgatcgccagGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTT