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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactatttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G55990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtccc------ttttagcttg-tatctcaaaaacaagat-tgggataacacatta-atgatat-atactatttttttgcag---------------
|||||||| ||||| |||||||||||  | || ||||| |||||||||||||| ||||| || ||||| |||| ||| ||  | ||||| || ||| |||||  || |        | ||||| | ||| | |      |  | ||   |   | ||||  |  | | | | || |   ||| ||               
TTGTTTGACACAAAACACAATGGAATTTTAGGATTTGATGAATTTGCTCGTGCACTCTCAGTATTTCATCCAAGTGCTCCACTTGATGAGAAGATTGACTgtgagttcagacgtactgtagctagatattttactcctcatctatgcagttctaaattatgtattgtcacaataatggcttggagcttatttgcaaaagt

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactatttttttgcag-----------------------------
|||||||| |||||||||||||||||  | || ||||| |||||||||||||||||||| || ||||| || ||||| ||  | ||||| |||||| |||||  | | ||  |   |||||  |    |    |  |    | |   || |||| || ||   | || | ||                                
TTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGACTgtgag-ctctcgtgttttgtagattggtactttggctt---tcaactataaatgttaaatctaagttctctgacatgattagcctaataacagtaggagcctta

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G173424_T02 (Zea mays), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtccc----ttttagcttgtatctcaaaaacaaga---ttgggataacacattaa---tgatatatactatttttttgcag---------------
|| ||||| |||||||||| ||||||  |||| ||||| |||||||||||||||||||| || ||||| || ||||| ||  | ||||| |||||| | |||  |  ||    ||||   |||||  |  | ||   |    |       | |  ||||   | |  |||| ||  |  || ||                
TTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctcccgtgttttgttttgtagattgataatttggctctcaactctaaatgttaaatctaagttatattacatcattacatgcttagcttaatggt

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcc------cttttagcttgtatctcaaaaacaagatt--gggataa--cacattaatgata-tatactatttttttgcag--------------
|| ||||||||||| |||||||| || || || ||||| ||||||||||| || ||||| || ||||| || ||||| ||  | ||||| || ||  | |||| ||        |||   || |||             ||||     ||||  ||  |  || |    | | ||| ||  ||  |              
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgtgatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactattttt---ttgcag-------------------------------------------------------------------------------------------
 | ||||| |||||||||||||| ||||| || ||||| || |||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||  | |||| ||  |    |  || |  |  | ||  |  |||     |  |  ||  |  ||||| ||||||||   ||  ||                                                                                           
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaattt--ttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacat-taatgatatatactatttttttgcag------------------------------------------------------------------------------------------------------------------------------
||||||||||||||||||||||| ||||| |  ||||| || ||||| ||||||||||| |||||||| || ||||| || || ||||| || ||| | |||| |       |  |   | | |  || ||    ||  | || |   | || || | |||     ||||     |                                                                                                                              
TTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaa-----tgacaaatgtttagaagac----tttagctatctggtctactgttttatctgggttttgaatgggaagggcatttattgtaaagggagctagatcattttttttgtttctgtagtttatttatttccttaatgcatttgttattgatagtaatgcatatgttggggattcccaactcttcctttttgcag

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G44580.1 (Glycine max), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactatttttttgcag--------------------------------------------------------------------------------
|| ||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||||||| || || || ||||| || || ||||| || ||  | |||| ||          || |    |||  |  |  || | ||| || |||     || ||   ||     ||||                                                                                 
TTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATAAGATCGAATgtatgttgtacaatattttttctacaattattattttagcata-cagattttctgtaaatttaataacaatgcacaattgaaatcaagtctttaattttctttgataacctttttaaataaacaaaaattgaacccatgtgatatcatgtttcag

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacaca-ttaatgatatatactatttttttgcag------------------------------------------------------------------------------------------------------------------------
|||||||||||||||||||| || ||||| |  ||||| || ||||| || |||||||| |||||||| || ||||| || || ||||| || ||| | |||| |       |  |   | | |  || ||   |      |     | ||  | || |    | |   |  | ||                                                                                                                        
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaa-----tgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactatttttttgcag------------------------------------------------------------------------------------------------------------------------
|||||||| |||||||||||||||||||| |  ||||| || ||||| ||||| ||||| |||||||| || ||||| || || || ||||||||| |||||| ||     ||||   |      ||| |     ||| |        |   |||  |     | |       ||                                                                                                                        
TTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAGTTTGCGCGTGCCCTCTCTGTCTTTCATCCCAATGCACCCATTGAAGACAAAATTGACTgtaagttgtagttagtaagaggacaaaataagttcttgtgtgtgtgtgtgtgtga-gtgagtgagtgagagagagagagaggacagacaatttggtttatgactttagtttactactcttatcttctacttcctgatgatttcatgctgatgcttattgatgtatgtttgggatgccaaatcatttcttttgcag

upper sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtccctttta--gcttg-------tatctcaaaaacaagattgggataacacatt-aatgatatatactatttttttgcag---------------
|||||||| |||||||| || |||||||| || |||||||| |||||||||||||| || || |||||||| || || ||||| || ||||| ||| | |||| || | ||  |  |||||       ||||   | ||   | |     || | | || ||   |   |    ||  |||  |                
TTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctttcaaatgcttgattaaattatccacataatgtgttctttgtacctctttcaacagtggttgtggttcattttaacataatatgaacaaac