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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct...

Basic information

species Arabidopsis thaliana
transcript AT5G53850.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgta--tggttttgtcgctttcaaggtagtaatacttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct
  |  | || ||  ||||     |  | ||  ||||     |||||||||  ||||| |||||||| || ||||| || |||||||| || |||||||||||     ||  | ||  || |    |       ||| |   ||  ||||       ||| ||   |  || |||   | |||||                  
TGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtgctatcctttgcttaatttgtccgcttcaacttgttttagtctaaattgtcta---attttcattggtattttgcag----------------

upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G574782_T01 (Zea mays), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatac--ttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct
  |  |  ||||  ||||     |  | ||| | ||     |||||||||  ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||    ||   | | |    || |  | |  ||| |||||| |      |||   | |    |   |  ||  |  |    | |||             
TGTGATGGCTGCAGATGGGAAAGTGCTTTCTGCGCCTGTAGCAAAGCCATGGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaatgctccctcctttttaatttttctgttgcttctgctt-----gttttgatctgaaaactctagtttcctttggtgttttgaag----------

upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G36620.1 (Glycine max), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgtt-agggatttctgtatacgtagcttgat-tatcactttgctattggccttctttatct-
  | ||||||   | ||||||  || | ||| | || ||||| || || |||||  |||| |||||||||||| | ||||||| |||||||||||||||||| | | || || | |       |   |||  ||| |   | ||| |  |  |||  | || ||  | ||||  | |       |||||   |  | ||    
TGTGTTATCTCACACTGGATCAGTCTTGTCTGCTCCATCTCCCAAACCTTACCCTCATAAACCTCCCAAGTGTTCTGATTGTGGTCCACTTTTCATGAAGgt-taggttagttgatgctgcactg--aatgattggtgtagagtttaatgcattcattctatgtgacatgatgcaactacccagtattgctttcatgtacaat

upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G35390.1 (Glycine max), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct--------------
  | |||||    | ||| ||  || | ||| | || ||||| || || |  ||  | |||||||| |||||||  ||||||| ||||||||||| |||||||  |||| ||     |||||  | |||  | ||| |    | |    ||| |||||    | |  || |    | |||  ||| ||| |||||  | |              
TGTATTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCGCACAAGCCTCCTAAGTGTAGTGATTGTGATCCACTTTTCAAGAAGgta-agtttggt-----tcaagaaaataa-gcatgaat----ggttaaaattactgta---attgagtggtccagagtttcatataggcattcttcttttgaggtttcacaaca

upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G35120.3 (Glycine max), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgtta--gggatttctgtatacgtagcttgat-tat-cactttgctattggccttctttatct
  | |||||    | ||| ||  || | ||| | || ||||| || || |  ||  | |||||||| |||||||  ||||||| ||||||||||| |||||||  |||| ||       ||  ||   ||   || |||  | |||  |  |||      | |  || ||||| ||| || | | || |||   ||    | | 
TGTGTTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCGCACAAGCCTCCTAAGTGTAGTGATTGTGATCCACTTTTCAAGAAGgta-agtttggtt--caagaaaataagcatgtatggttc-acattactgtaattgagtggtccagagtttgatatatgcattcttcttttgatgtttcacaaca

upper sequence: AT5G53850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0014g02480.t01 (Vitis vinifera), 5'ss of exon 2
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatgg---ttttgtcgctttcaa--ggtagtaatacttgattctgcgttaggg----atttctgtatacgtagcttgattatcactttgctattggccttctttatct
  | |||||| | | ||| |   || | ||| | || ||||| |||||||||||||||||||||||||| || |  ||||||||||| |||||||||||||||||    ||||||   | | ||  |  | ||||  || |  | || |||        ||  | |  | |    |||| |     | || | ||              
TGTGTTATCTCCAAGTGGGTGTTTCTTGTCTTCCCCATCTCCGAAGCCATACCCAAATAAGCCTCCCAAATGCAGTGATTGTGCTCCTCTTTTCATGAAGgtatgcattttttgtgtttcttaattgtcattaattgttaaaccagccttaaaatgcagttcttttgcatgctctttgagtgattttctggtgttattta---------