1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaatatatatagaaaattcatcacatagaatcttctgagattatcttgtttataactgtgttttgtgtatgtgtgtgaagGCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAACGGCTGATCCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATT
species | Arabidopsis thaliana |
transcript | AT5G53390.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGCCACCCACAT GCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAEST: gi|86084231|gb|DR379990.1|DR379990
genomic: TGGCCACCCACATgtaagtaata ... gtgtgtgaagGCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTA
EST: ATGGTCACCCACTGAATTATATCTCCCCATGTGTTTTTGGCCACCCACAT GCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTA
genomic: ATGGTCACCCACTGAATTATATCTCCCCATGTGTTTTTGGCCACCCACATgtaagtaata ... gtgtgtgaagGCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTA
tagaatcttctgagattatcttgtttataactgtgttttgtgtatgtgtgtgaagGCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAACGGCTGATCCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATT
ttataac putative branch site (score: 2)
attatcttgtttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatatatatagaaaattcatcacatagaatcttctgagattatcttgtttataactgtgttttgtgtatgtgtgtgaagGCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAACGGCTGATCCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG