1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGgtaacaccccaaacctcattgcttaagttcttgaagtatccaaatgggaaactgattgtgataaccggatttgacacag
species | Arabidopsis thaliana |
transcript | AT5G52970.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTG GGAACATATTGAATTTCEST: gi|125095251|gb|EL152461.1|EL152461
genomic: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGgtaacacccc ... tttgacacagGGAACATATTGAATTTC
EST: ACCCGACTTTTG GGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCEST: gi|124910722|gb|EH984802.1|EH984802
genomic: ACCCGACTTTTGgtaacacccc ... tttgacacagGGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTC
EST: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTG GGAACATATTGAATTTCAATEST: gi|125277576|gb|EL291661.1|EL291661
genomic: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGgtaacacccc ... tttgacacagGGAACATATTGAATTTCAAT
EST: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTG GGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACAEST: gi|124992768|gb|EL065037.1|EL065037
genomic: CTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGgtaacacccc ... tttgacacagGGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACA
EST: CGCTGACCCGACTTTTG GGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTC
genomic: CGCTGACCCGACTTTTGgtaacacccc ... tttgacacagGGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTAGCAATCAAAGATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGgtaacaccccaaacctcattgcttaagttcttgaagtatccaaatgggaaactgattgtgataaccggatttgacacag
- - - - - - - - - - - - GGTGGA