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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcctcctctatatttccacattacagagtcttttgcatcttcttttttttttccttctacttatctgttttgtttcatctgtttgtagCTCTTGGAACCAAGCAACGCATGAGAACTCTCTGTGGCAATCACAATTTGACCTTCACTTCAATCACAAAGTCTTGATTCGTATGCAGTCCGATATTGAC

Basic information

species Arabidopsis thaliana
transcript AT5G52880.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124914661|gb|EH988535.1|EH988535
EST:     TTCAGTTTCCTCGAGATATCGTCCTTAGTTTCCTCAGCTCAAGTGTCTCG                         CTCTTGGAACCAAGCAACG
genomic: TTCAGTTTCCTCGAGATATCGTCCTTAGTTTCCTCAGCTCAAGTGTCTCGgtacttcctc ... ctgtttgtagCTCTTGGAACCAAGCAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatcttcttttttttttccttctacttatctgttttgtttcatctgtttgtagCTCTTGGAACCAAGCAACGCATGAGAACTCTCTGTGGCAATCACAATTTGACCTTCACTTCAATCACAAAGTCTTGATTCGTATGCAGTCCGATATTGAC
       tcttttttttttcctt  CT-rich tract
      ttctttttttttt  TA-rich tract