1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgatgttgttaagtttcaaaagtagacaaatttacacacttatctataaaatcgttttgtgtatatttggttgagcttcttgtgtatgttttgttatagGCAGACGAGATTACGCAGAAGAACATGTTGCAGGAATTATGTATCAAGGCTCGTGTTGTCTGTTTATTTTAAATATAATATCCAAGAGATATTTGCAGCC
species | Arabidopsis thaliana |
transcript | AT5G50565.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGATCTACATATTTTGTCTCTCCCTAAAGTTGCAATCGCCAGTCTGAG GCAGACGAGATTACGCAGAAGAACATGTTGCAGGAATTATEST: gi|125049054|gb|EL121323.1|EL121323
genomic: CTAGATCTACATATTTTGTCTCTCCCTAAAGTTGCAATCGCCAGTCTGAGgttccattac ... tttgttatagGCAGACGAGATTACGCAGAAGAACATGTTGCAGGAATTAT
EST: CTAGATCTACATATTTTGTCTCTCCCTAAAGTTGCAATCGCCAGTCTGAG GCAGACGAGATTACGCAAGAAGAACATGTTGCAGGAATTATG
genomic: CTAGATCTACATATTTTGTCTCTCCCTAAAGTTGCAATCGCCAGTCTGAGgttccattac ... tttgttatagGCAGACGAGATTACGCA-GAAGAACATGTTGCAGGAATTATG
tataaaatcgttttgtgtatatttggttgagcttcttgtgtatgttttgttatagGCAGACGAGATTACGCAGAAGAACATGTTGCAGGAATTATGTATCAAGGCTCGTGTTGTCTGTTTATTTTAAATATAATATCCAAGAGATATTTGCAGCC
ttttgtt CT-rich tract
ttttgtgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgatgttgttaagtttcaaaagtagacaaatttacacacttatctataaaatcgttttgtgtatatttggttgagcttcttgtgtatgttttgttatagGCAGACGAGATTACGCAGAAGAACATGTTGCAGGAATTATGTATCAAGGCTCGTGTTGTCTGTTTATTTTAAATATAATATCCAAGAGATATTTGCAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA