Sequence
atgc intronic sequence ATGC exonic sequence...tgaggatttaagatttgcctgcttttgtatttctctttggtcttgtaatgtcagaattgtttctttcttaaagttgatttctttgtcaatctttaaacagAGATCGAGGTGTTTTTGACGCAATAGAAGATCGTTCTGCGTGTTATTATCCAAGAACTGCTTTAGTGTTATAAACATTTGAGCAGAGATGCATTTGTGGC
Basic information
species | Arabidopsis thaliana |
transcript | AT5G49015.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164144065|gb|ES176626.1|ES176626EST: ATAGAAAAACAAATCTTCTGCTCAGTCTTGGATAGAGAG AGATCGAGGTGTTTTTGACGCAA
genomic: ATAGAAAAACAAATCTTCTGCTCAGTCTTGGATTGAGAGgtaagagatc ... ctttaaacagAGATCGAGGTGTTTTTGACGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgtcagaattgtttctttcttaaagttgatttctttgtcaatctttaaacagAGATCGAGGTGTTTTTGACGCAATAGAAGATCGTTCTGCGTGTTATTATCCAAGAACTGCTTTAGTGTTATAAACATTTGAGCAGAGATGCATTTGTGGC
agttgat putative branch site (score: 5)
tcttt putative PPT
aatctttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaggatttaagatttgcctgcttttgtatttctctttggtcttgtaatgtcagaattgtttctttcttaaagttgatttctttgtcaatctttaaacagAGATCGAGGTGTTTTTGACGCAATAGAAGATCGTTCTGCGTGTTATTATCCAAGAACTGCTTTAGTGTTATAAACATTTGAGCAGAGATGCATTTGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - ctctttg