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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcctattcttctttatttgtgtttcgtataatagatgtgtttcttatttgtgttgttttatcatctgagatgggttttttcagGTGGATTTACCGGAATACATCGCAAAGTATTGTTTGTCGACATGGATGAAGGGGTTATTAGCTAGACAAAAATGATTCACAGACAAGTCGGAATTCAGAT

Basic information

species Arabidopsis thaliana
transcript AT5G48340.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464830|gb|EG507422.1|EG507422
EST:     GTCGAAGTTGGTTGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGT                         GTGGATTTACCGGAATACATCGCAAAGTATTGTTTGTCGACATGGATGAAG
genomic: GTCGAAGTTGGTTGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTgtgagttgcc ... gttttttcagGTGGATTTACCGGAATACATCGCAAAGTATTGTTTGTCGACATGGATGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatagatgtgtttcttatttgtgttgttttatcatctgagatgggttttttcagGTGGATTTACCGGAATACATCGCAAAGTATTGTTTGTCGACATGGATGAAGGGGTTATTAGCTAGACAAAAATGATTCACAGACAAGTCGGAATTCAGAT
                                              ttttttc  CT-rich tract
           tttcttattt  TA-rich tract