1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcacaagtggccacattcatatcataatttaagaaagattaattcgtgtcttgttttaatcctctttctggacgtttataccatcaatatgtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCTGCAACATGAATTG
species | Arabidopsis thaliana |
transcript | AT5G47180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCT ACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCEST: gi|86076486|gb|DR372243.1|DR372243
genomic: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCTgtgagtaccc ... gtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGC
EST: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCT ACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAAEST: gi|86078795|gb|DR374552.1|DR374552
genomic: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCTgtgagtaccc ... gtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAA
EST: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCT ACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAA
genomic: CTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCTgtgagtaccc ... gtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAA
gtgtcttgttttaatcctctttctggacgtttataccatcaatatgtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCTGCAACATGAATTG
ttttaat putative branch site (score: 3)
ttgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacaagtggccacattcatatcataatttaagaaagattaattcgtgtcttgttttaatcctctttctggacgtttataccatcaatatgtatgaacagACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCTGCAACATGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
tcacaag
- - - - - ccacatt
- - - - - - - - - - atcataa
- - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatca