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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttggtttgatatataaatgtgcattttataagctcactcgtactttaaagtgatgaatctgttacaaagttttaacagttcttcttctttctatgtatagAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACGTGCAAACAGGTCATCTTCGGTTAAAGAGCGACGTCTATAGCTTCGGTGTTGTGCTCTACGAGA

Basic information

species Arabidopsis thaliana
transcript AT5G47070.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124981274|gb|EL054153.1|EL054153
EST:     GCTTGCCAGAGAAGGACCTGATGGCGACAATACTCATGTCACTACCGACA                         AGAGTTGGAACACACGGCTATGCGGC
genomic: GCTTGCCAGAGAAGGACCTGATGGCGACAATACTCATGTCACTACCG-CAgtaagtttgg ... ctatgtatagAGAGTTGGAACACACGGCTATGCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagtgatgaatctgttacaaagttttaacagttcttcttctttctatgtatagAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACGTGCAAACAGGTCATCTTCGGTTAAAGAGCGACGTCTATAGCTTCGGTGTTGTGCTCTACGAGA
                        ttttaac  putative branch site (score: 2)
                                 ttcttcttctttctat  putative PPT
                ttacaaagttttaa  TA-rich tract