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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatattaacttccaaaaatctatttaaagtattaggtaacttttcaaatttttaatatttttgtgttgttacttttagACAAGTCGTTTCTCCCAAACCGGGACATGGAATGGTACTTCTTCTGCTCAAGGGACAAAAAATATCCTAATGGTTTTCGTACAAATCGAGGAACAAAGGC

Basic information

species Arabidopsis thaliana
transcript AT5G46590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164037075|gb|EL997141.1|EL997141
EST:     CATTCCCGTCATCGATCTTTATAGTTTCGATCCTTGGGAGTTACCAG                         ACAAGTCGTTTCTCCCAAACCGGGACATGGAATGGTACTTCTTCTGCTCAA
genomic: CATTCCCGTCATCGATCTTTATAGTTTCGATCCTTGGGAGTTACCAGgtaatatatt ... ttacttttagACAAGTCGTTTCTCCCAAACCGGGACATGGAATGGTACTTCTTCTGCTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagtattaggtaacttttcaaatttttaatatttttgtgttgttacttttagACAAGTCGTTTCTCCCAAACCGGGACATGGAATGGTACTTCTTCTGCTCAAGGGACAAAAAATATCCTAATGGTTTTCGTACAAATCGAGGAACAAAGGC
                          ttttaat  putative branch site (score: 3)
                                             ttactttt  putative PPT
                 ttttcaaatttttaat  TA-rich tract