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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatcatttttagtcaaacaaaattctcttgtttcagatatttttgtgtatatgattaagagttgattgatattttgagtgttgatgtgattagTGTACGAGGTGTTTGAAAGAATGGCGTATTATGGAATATCAAGCAACCTAGTTATCTACATGACTACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAA

Basic information

species Arabidopsis thaliana
transcript AT5G46040.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164050925|gb|ES115422.1|ES115422
EST:     CGTCCGAAGATCCCAAACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTG                         TGTACGAGGTGTTTGAAAGAATGGCGTATTATGGAA
genomic: CGTCCGAAGATCCCAAACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGgtaaatatca ... atgtgattagTGTACGAGGTGTTTGAAAGAATGGCGTATTATGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgtgtatatgattaagagttgattgatattttgagtgttgatgtgattagTGTACGAGGTGTTTGAAAGAATGGCGTATTATGGAATATCAAGCAACCTAGTTATCTACATGACTACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAA
                                        tgttgat  putative branch site (score: 4)
                       ttgattgatatttt  TA-rich tract