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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattaatcggtccgagtttcaagaaatctcttaagaatctttctctttttggtatgtttggtttcaataaatttggatgacgttcaattgtgcagGGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAAAACCGGAATCGTTTTTACTCCATACAGAGTTTCCTTTTTTCCGGTACATAAATATCT

Basic information

species Arabidopsis thaliana
transcript AT5G45850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087483|gb|DR383242.1|DR383242
EST:     CGATTGTGAAAACATCGTATTCACACCATGATCATGTTCGCTATTCAGAG                         GGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAAAACCGGAA
genomic: CGATTGTGAAAACATCGTATTCACACCATGATCATGTTCGCTATTCAGAGgtatgtatta ... aattgtgcagGGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAAAACCGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctttttggtatgtttggtttcaataaatttggatgacgttcaattgtgcagGGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAAAACCGGAATCGTTTTTACTCCATACAGAGTTTCCTTTTTTCCGGTACATAAATATCT
                     tttcaataaattt  TA-rich tract