Sequence
atgc intronic sequence ATGC exonic sequenceATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTgtaagttctctatcacctcatcttagatttctttctgtgcattgttcctttaactgcttcaagttggcttggtttcttgacattatagttcgtccaatcc...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G45190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G45190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S119_132V6.1 (Physcomitrella patens), 5'ss of exon 1
ATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTgtaagttctctatcacctcatcttagatt-tctttctgtgcattgttcctttaactgcttcaagttggcttggtttcttgacattatagttcgtccaatcc----
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AATCGCCCTCAAGGTTGGATGGAATCGACATAAAGAAAGAGACTTACTTTCGGAAATCGTACTGCACTTTTTTACAAGATTTGGGCATGCGATTAAAAGTgtaagacccaga---cttggtgccagtctgtcctcatttattttagtcagcaatcaaattatggttagttttcatt-ttgactctgttactc-tctgttttggat
upper sequence: AT5G45190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S86_187V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTgtaagttctctatcacctcatcttagatttctttctgtgcat-tgttcctttaactgcttcaagttggcttggtttcttgacattatagttcgtcc--aatcc
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ATTCGCCTTCCAGATTGGATGGAATTGACATCAAGAAGGAGACATACTTCCGGAAGTCCTACTGTACGTTTTTGCAAGATCTTGGCATGCGGTTGAAAGTgtaagaactcga--atctggtgttggtttattggaatagcgtatatatctgtgttcatttttttttcctcatgtccacttacgtttcaatatctctttaatc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152033633|gb|AV832268.2|AV832268EST: CGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGT TCCCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTT
genomic: CGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTgtaagttctc ... ttccaatcagTCCCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAGTgtaagttctctatcacctcatcttagatttctttctgtgcattgttcctttaactgcttcaagttggcttggtttcttgacattatagttcgtccaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctttc