1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGGGTGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatataaaactcgatactcaggttttcataatttattgtgttgtttccagctctcaaaacatgttttgtttgcag
species | Arabidopsis thaliana |
transcript | AT5G42270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCTAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATEST: gi|124987661|gb|EL060104.1|EL060104
genomic: AGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTC-AAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGAT
EST: ACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTTCTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGEST: gi|125266412|gb|EL280497.1|EL280497
genomic: ACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTT-CTTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGG
EST: TGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCGEST: gi|124937329|gb|EL014111.1|EL014111
genomic: TGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCG
EST: ACAAGTTGCAGTTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGAEST: gi|125271010|gb|EL285095.1|EL285095
genomic: ACAAGTTGCAG-TTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGA
EST: TGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCGEST: gi|124794579|gb|EH884258.1|EH884258
genomic: TGCAGTTGGTGGAGCAGGAGGAAACCCTTTC-TTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCG
EST: GAAACCCTTTCTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCGEST: gi|124796861|gb|EH886540.1|EH886540
genomic: GAAACCCTTTCTTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCG
EST: GGAGGAAACCCTTTCTTCGGGTCAAAGT TTGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCGEST: gi|124823953|gb|EH908819.1|EH908819
genomic: GGAGGAAACCCTTTCTT-GGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTGATGCG
EST: GACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGT ATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTG
genomic: GACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatat ... ttgtttgcagATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGGTGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatataaaactcgatactcaggttttcataatttattgtgttgtttccagctctcaaaacatgttttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA