Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagttttattgacgattgaaattttttacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA

Basic information

species Arabidopsis thaliana
transcript AT5G42020.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 3'ss of exon 1
catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagtttt-attgacgattgaaattttttacgatt---cagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
   || |   ||  | |||| ||| |   |       ||  ||   |   |||||  |  |  || |  || | ||  |||     |  | |||  |    ||||||||||  ||||| | || |  |||||||| ||  | |  || || ||| |||||||||| || |||||||| || |||||||||||||||||||||||
---tttaactatgtttgagttaaactttatccctgagttctttaggtaa-gttttcagaatcaatggaattgaatgttgatgaggttaatctacactatggcagGATGTTTGGTTGCGATCTCTATCGCAAAAGAGGAATCCAACAAATTGGGAACAGTTATTGGTATTGATCTTGGAACAACTTACTCTTGTGTTGGTGTTTA

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 1
-catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagttttatt-gacgattgaaattttt----tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
  |    | ||| ||    |   |  | |  |  || | |||||  |  ||| |   || | ||  || |||||| ||   || | ||||      |    | |||||| | ||  |||  |||||| ||||||||| || || || ||||| ||| | || || |||||||||||||| || || ||||| ||||||||||||||
agaaagaactgacaagctggatcacctgaact--gaaaatggttc-taagtgct---ggctgtgtgagctttatttgagtcttaatatttccaaactgtattgcagGATTTCTAGCTGCAATTTCCATTGCAAAAGAGGAAGCAACCAAGTTGGGAACTGTCATCGGGATAGATCTTGGAACAACCTACTCATGTGTTGGTGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060504|gb|DR356261.1|DR356261
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060458|gb|DR356215.1|DR356215
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060469|gb|DR356226.1|DR356226
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060502|gb|DR356259.1|DR356259
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060472|gb|DR356229.1|DR356229
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060491|gb|DR356248.1|DR356248
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060495|gb|DR356252.1|DR356252
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060444|gb|DR356201.1|DR356201
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060509|gb|DR356266.1|DR356266
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060481|gb|DR356238.1|DR356238
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|152035452|gb|BP853947.2|BP853947
EST:     CGCTCGTTTGGAGCAAACAGCCACTGTGGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTCCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: CGCTCGTTTGGAGCAAACAG-CACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060482|gb|DR356239.1|DR356239
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060440|gb|DR356197.1|DR356197
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060446|gb|DR356203.1|DR356203
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTTTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACNAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060512|gb|DR356269.1|DR356269
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060508|gb|DR356265.1|DR356265
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060464|gb|DR356221.1|DR356221
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060454|gb|DR356211.1|DR356211
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGNGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060453|gb|DR356210.1|DR356210
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060452|gb|DR356209.1|DR356209
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060498|gb|DR356255.1|DR356255
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060470|gb|DR356227.1|DR356227
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060456|gb|DR356213.1|DR356213
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060460|gb|DR356217.1|DR356217
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060474|gb|DR356231.1|DR356231
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060499|gb|DR356256.1|DR356256
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060485|gb|DR356242.1|DR356242
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060501|gb|DR356258.1|DR356258
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         N
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcag-
EST: gi|86060501|gb|DR356258.1|DR356258
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         N
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcag-
EST: gi|86060437|gb|DR356194.1|DR356194
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTNTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060483|gb|DR356240.1|DR356240
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060445|gb|DR356202.1|DR356202
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060461|gb|DR356218.1|DR356218
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060497|gb|DR356254.1|DR356254
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060434|gb|DR356191.1|DR356191
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060492|gb|DR356249.1|DR356249
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060505|gb|DR356262.1|DR356262
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060465|gb|DR356222.1|DR356222
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060475|gb|DR356232.1|DR356232
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060457|gb|DR356214.1|DR356214
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060466|gb|DR356223.1|DR356223
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGNGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060471|gb|DR356228.1|DR356228
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060486|gb|DR356243.1|DR356243
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060449|gb|DR356206.1|DR356206
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGNGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAAAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060438|gb|DR356195.1|DR356195
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060507|gb|DR356264.1|DR356264
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060473|gb|DR356230.1|DR356230
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060490|gb|DR356247.1|DR356247
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060462|gb|DR356219.1|DR356219
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060488|gb|DR356245.1|DR356245
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|47829411|gb|CK119095.1|CK119095
EST:     TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060467|gb|DR356224.1|DR356224
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060459|gb|DR356216.1|DR356216
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060450|gb|DR356207.1|DR356207
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060489|gb|DR356246.1|DR356246
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|125287690|gb|EL301775.1|EL301775
EST:     TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGTCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgtttttggttttgatagttttattgacgattgaaattttttacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
                         tattgac  putative branch site (score: 2)
                                        ttttttac  putative PPT
             ttttgatagttttatt  TA-rich tract