Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTGGATGTTGCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTGGCTAATCCAGgtacaacaagactactcgttttttctggatcattgagaattgaaaccgttattgtgtgtgtgttttttttttgtttcctaagatttattaggccatttat...

Basic information

species Arabidopsis thaliana
transcript AT5G41120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41120.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTGGATGTTGCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTGGCTAATCCAGgtacaacaagactactcgttttttctggatcattgagaattgaaaccgttattgtgtgtgtgttttttttttgtttcctaagatttattaggccatttat--
||||| ||  | |||||||||||| ||||||  |  |||||||| | |||||||||| |||||||||| ||||||||||   | ||| ||||||| ||||||   |     ||  | ||   || ||  |   |||||  | | ||  | | |   | | |    |  | |   |        |  |||    ||   ||  
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgagaacttcctttttgtaaattatg--ttgatgagagcttatactttcacttgatttattcactgctataaatggtccttttcaattccagcaaaaattc