1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctccacttaagttgtgttattgcggtagttacggtctataatccaatgatgagtaggttataatagttctataatctcttctttggttttctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
species | Arabidopsis thaliana |
transcript | AT5G38220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCTTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG GTATGATTACTCTGGTTATGGTCAGTCTACTGGEST: gi|19875872|gb|AU236703.1|AU236703
genomic: TTGAGC-TTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGG
EST: TTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG GTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAGEST: gi|163985472|gb|ES143077.1|ES143077
genomic: TTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
EST: TTGAGTCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG GTATGATTACTCTGGTTATGGTCAGTCTACTGG
genomic: TTGAG-CTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGG
atgatgagtaggttataatagttctataatctcttctttggttttctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
taatctcttctttggt CT-rich tract
ttataatagttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccacttaagttgtgttattgcggtagttacggtctataatccaatgatgagtaggttataatagttctataatctcttctttggttttctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
- -cacttaa
- - - - - - - - - - - - - - - - - - - -aatccaa