1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacacacaatcagtctttgaattttgttttattctttggatttgataagacttgtgaattatatgtttttaagctaagcaagcatgtctctgtttccaaaatgatcagattaaaatgtttttttctttctttctttcgtttcactgtgtttactagGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGGTCCTTATGATGCCATGGACGATGATGATTTCATGTGAGAAAATGGCAA
species | Arabidopsis thaliana |
transcript | AT5G37475.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGCCAAAAAGAAGTCAG GTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGEST: gi|124949934|gb|EL025440.1|EL025440
genomic: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAGgtacacacaa ... tgtttactagGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGG
EST: GAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAG GTAAGAAGAAACAACTTCATGTTGATAAGEST: gi|86083617|gb|DR379376.1|DR379376
genomic: GAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAGgtacacacaa ... tgtttactagGTAAGAAGAAACAACTTCATGTTGATAAG
EST: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAG GTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGEST: gi|125024040|gb|EL096309.1|EL096309
genomic: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAGgtacacacaa ... tgtttactagGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGG
EST: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAG GTAAGAAGAAACAACT
genomic: TGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAGTCAGgtacacacaa ... tgtttactagGTAAGAAGAAACAACT
tgatcagattaaaatgtttttttctttctttctttcgtttcactgtgtttactagGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGGTCCTTATGATGCCATGGACGATGATGATTTCATGTGAGAAAATGGCAA
tttttttctttctttc CT-rich tract
attaaaatgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacacaatcagtctttgaattttgttttattctttggatttgataagacttgtgaattatatgtttttaagctaagcaagcatgtctctgtttccaaaatgatcagattaaaatgtttttttctttctttctttcgtttcactgtgtttactagGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGGTCCTTATGATGCCATGGACGATGATGATTTCATGTGAGAAAATGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA