Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcacaagtctttatattagatggtcaaattttcctgtcttctgtgaattctccatggaaaactgatttttggctgggcagacttggatgcatctg...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G37370.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G37370.4 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G39220.1 (Glycine max), 5'ss of exon 4
GAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcac----aagtcttt-atattagatggt-caaattttcctgtcttctg-tgaattctccatggaaaactgatttttggctgggcagacttggatgcatctg
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GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatg-cttctgttttgcttgtagacaatg------
upper sequence: AT5G37370.4 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G40900.1 (Glycine max), 5'ss of exon 4
GAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcacaagtctttatattagatggtcaaattttcctgtcttctgtgaattctccatggaaaactgatttttggctgg----gcagacttggatgcatctg---
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GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgtta----tccttaaatctttcaggctatattttacgtaa---gagaatgcttcctggtttaccctctttggattcatgcttccgttttgcttgtagacaatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164034893|gb|ES131227.1|ES131227EST: TGTACGTGATTTGCTGCTTGGACTG TACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCA
genomic: TGTACGTGATTTGCTGCTTGGACTGgtgagtcaca ... ttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcacaagtctttatattagatggtcaaattttcctgtcttctgtgaattctccatggaaaactgatttttggctgggcagacttggatgcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT