1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttgctataaatgtgtttattagtcatttatcataatactttaatgtctccatgatgccaattcctgaatctgacttactgttgttggtttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAAACCTTCTGGTT
species | Arabidopsis thaliana |
transcript | AT5G37370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTACGTGATTTGCTGCTTGGACTG TACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCAEST: gi|116414409|gb|EG457001.1|EG457001
genomic: TGTACGTGATTTGCTGCTTGGACTGgtgagtcaca ... ttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCA
EST: GACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTG TACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAG
genomic: GACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcaca ... ttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAG
tgtctccatgatgccaattcctgaatctgacttactgttgttggtttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAAACCTTCTGGTT
gacttac putative branch site (score: 2)
tttttttgc putative PPT
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgctataaatgtgtttattagtcatttatcataatactttaatgtctccatgatgccaattcctgaatctgacttactgttgttggtttttttgcagTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAAACCTTCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG