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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTAATTATTGTCTTTCAGGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTCAAgtgagctattagtattacatgaatagaggttgttaatgattttgttttagtccctatttttataactgtgatgatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G37350.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37350.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 4
CTTTAATTATTGTCTTTCAGGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTCAAgtgagc-tattagtattacatgaatagag--------gttgttaatgattttgttttagtccctatttttataactgtgatgatttcag------------
                    ||||||||||||||||| || |||||||| |||   ||||||||||| ||||| ||||| ||||||||| |||| ||||||| ||   |  ||   ||  |   |  ||        |||| |    ||| | ||  || |   | | || ||      || || |  |            
--------------------GCAAATGTTTATCATGCAACTAAATCTGATGGTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTTTGGTATTCAAgtaagtacaacagctgtagcttgtttcagcctcttctgttgctctaaattgtattgaaggctgaagtgtt-tagaaagaattatataggcagccataaatt

upper sequence: AT5G37350.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 4
CTTTAATTATTGTCTTTCAGGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTCAAgtgagc-tattagtattacatgaatagag--------gttgttaatgattttgttttagtccctatttttataactgtgatgatttcag------------
                    ||||||||||||||||| || ||||||||   |   ||||||||||| ||||| ||||| |||||||||||||| || |||| ||   |  ||   ||  |   |  ||        |||| ||  |||| | ||  || |   | | || ||      || || |  |            
--------------------GCAAATGTTTATCATGCAACTAAATCTGATACTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTCTGGTATTTAAgtaagtacaacagctgtagcttgtttcagcttcttctgttgctatagattgtattggaggctgaaatgtt-tagaaagaattatataggcagtcataaatt

upper sequence: AT5G37350.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 4
CTTTAATTATTGTCTTTCAGGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTCAAgtgagctattagtattacatgaatagaggt--tgttaatgattttgttttagtccctattttta--taactgtgatgatttcag----------------
                    |||||||||||||||||||||||||| || |||   ||||||||||| ||||||||||| || |||||||| || || |||| || | |  | |     | | | |  ||  ||  ||| ||  ||| |  |     | | | |   |    | |  ||  ||                 
--------------------GCAAATGTTTATCATGCCACAAAATCCGATGGTCACGAACTTGCAATTAAAGTGTACAAAACTTCTGTTCTAGTATTTAAgtaagttctatgcaccttttaactggctgtgatggaaattatagtgtatacggagtgaatataagacagtcataaaaataccaatgcatccgtgtatttt