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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctcttactgattctgggaaattcaatgcatcttcggattcagtattttcttaaccgagcatatttataagaaacagcttcccctaatctccctgaaaactgtgaattagtttccttcttataatatgaaaactggactgatttgaagctggaaactgatagtagtttgcattaatatatgtattcagATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACG

Basic information

species Arabidopsis thaliana
transcript AT5G37340.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37340.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G34890.1 (Glycine max), 3'ss of exon 5
gtgagttctcttactgattctgggaaattcaatgcatcttcggattcagtattttcttaaccgagcatatttataagaaacagcttcccctaatctccctgaaaactgtgaattagtttccttcttataatatgaaaactggactgatttgaagctggaaactgatagtagtttgcattaatatatgtatt--cagATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACG
                                                                                             | |        | | |      |     || ||  || ||   |  || | ||  |   |  |  |  |  |  | |  |||| |  ||  |||  ||  ||||| |||||||||||||||||||||||||||||||| ||  |||||||| | || |||
---------------------------------------------------------------------------------------------tttattgagtgattattg--cggccctattattgaaa-attttatgtgtaatgtgtaataaattcattcaaaaggcaccttgcttagatgcatgattttgcagATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACG

upper sequence: AT5G37340.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G02690.1 (Glycine max), 3'ss of exon 5
gtgagttctcttactgattctgggaaattcaatgcatcttcggattcagtattttcttaaccgagcatatttataagaaacagcttcccctaatctccctgaaaactgtgaattagtttccttcttataatatgaaaactggac-tgatttgaagctggaaactgatagtagtttgcattaatatatgtatt--cagATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACG
                                                                                                  || |||       | || | |  ||||  ||||   ||   |     | || || |  |  |  |  |  | |  |||| |  || ||||  ||  ||||| || |||||||||||||||||||||||||| || ||| |||||||| | || |||
------------------------------------------------------------------------------------------------ttctaaaattgagtgactattgtggttctattaatgaaaattttaagtgtaatgtgtaa-taaattcaaaaggcaccttgcttatatgtatgattttgcagATACCAGAACTGGATTTTGAGATTCCACCAGAAGCTCAACGTGGTAGTCTGTCAACG

upper sequence: AT5G37340.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv01s0011g01690.t01 (Vitis vinifera), 3'ss of exon 5
gtgagttctcttactgattctgggaaattcaatgcatcttcggattcagtattttcttaaccgagcatatttataagaaacagcttcccctaatctccctgaaaac-tgtgaattagtttccttcttataatatgaaaactggactgatttgaagctggaaactgatagtagtttgcattaatatatgtattcagATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACG
                                                                                           |||       ||  | | |   | ||   |    ||| | | |    |   |  || ||      |     ||   ||   |||        |||| | | |||||||||||| ||||||||||||| || |||||||| ||  |||| ||| |||| || 
----------------------------------------------------------------------------------------tacaatgaattcaaagtcatattgctaaggaactcctttaaattttagtcatgagtatggttcttcattt---tctctcagccttttat----gcatatatgtgcagATTCCTGAATTGGATTTTGAGATCCCTCCAGAGGCTCAGTGTGGAAGTCTATCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggactgatttgaagctggaaactgatagtagtttgcattaatatatgtattcagATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACG
                                    cattaat  putative branch site (score: 3)
                                     attaatatatgtattc  TA-rich tract