1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtggttgtcattttcatcaaaaacccatcatcgttctggtttttgttttatctactacttcaaatgttgtaatgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATACCTTTGCGGAGATGAATTTAACTCTGTTCGCGCTGTGAATGATTCAGAAT
species | Arabidopsis thaliana |
transcript | AT5G35670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAAT GGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATACEST: gi|86055838|gb|DR351595.1|DR351595
genomic: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAATgtatgtggtt ... atgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATAC
EST: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAAT GGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATACEST: gi|86055840|gb|DR351597.1|DR351597
genomic: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAATgtatgtggtt ... atgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATAC
EST: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAAT GGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATAC
genomic: GAAGCATTTTCTTCAGGAACAAATCATTTGGAGCTCATGACTACAACAATgtatgtggtt ... atgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATAC
atcatcgttctggtttttgttttatctactacttcaaatgttgtaatgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATACCTTTGCGGAGATGAATTTAACTCTGTTCGCGCTGTGAATGATTCAGAAT
tgttttc CT-rich tract
tttttgttttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggttgtcattttcatcaaaaacccatcatcgttctggtttttgttttatctactacttcaaatgttgtaatgttttcagGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTCGGTTAGATCATACCTTTGCGGAGATGAATTTAACTCTGTTCGCGCTGTGAATGATTCAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG