1 5' 3' | 2 5' 3' | 3 5' 3' |
...acagtcattttcgatctcagtgtatgtcactgttgttggttcttgtctaatataagatagttctgttttttctttctttttgcattgtttggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTCCTAGGAAATG
species | Arabidopsis thaliana |
transcript | AT5G27700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCEST: gi|164164772|gb|ES094799.1|ES094799
genomic: GTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGC
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCEST: gi|164048188|gb|ES209094.1|ES209094
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTC
EST: CCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGEST: gi|164060098|gb|ES183647.1|ES183647
genomic: CCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAG
EST: GCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCEST: gi|116476469|gb|EG519061.1|EG519061
genomic: GCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTC
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGEST: gi|125304089|gb|EL318174.1|EL318174
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGG
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTEST: gi|164016213|gb|EL989999.1|EL989999
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTT
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTT-CAAAGCTAAGCTTTCAAGATGCAAAACEST: gi|164004425|gb|ES139546.1|ES139546
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAAC
EST: GGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCEST: gi|116433168|gb|EG475760.1|EG475760
genomic: GGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGC
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGACGCAAAACGAAGAGGGEST: gi|124778882|gb|EH868825.1|EH868825
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGG
EST: GCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGEST: gi|125278067|gb|EL292152.1|EL292152
genomic: GCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAG
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGAEST: gi|164208207|gb|ES165100.1|ES165100
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGA
EST: CCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTT-CAAAGCEST: gi|164077646|gb|ES046686.1|ES046686
genomic: CCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGC
EST: CCGGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGEST: gi|124980298|gb|EL053260.1|EL053260
genomic: CCGGTTGCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAG
EST: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAG GACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAG
genomic: GCCGCACCTGCTTCGCTTCTCCTCTCTCGCTCTCTACTCAGgtaggataat ... ggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAG
tctaatataagatagttctgttttttctttctttttgcattgtttggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTCCTAGGAAATG
gtctaat putative branch site (score: 3)
ttttttctttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagtcattttcgatctcagtgtatgtcactgttgttggttcttgtctaatataagatagttctgttttttctttctttttgcattgtttggatatatagGACTCGTTTACTCTTTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTCCTAGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - -atctcag