1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataatcatcagattcatcattaggtgttgaaatcattgatctttggtttgaatcatatatacatgatttggtgttgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAAGTTAAGGCTCCACCTCAGCTACAGAAAACG
species | Arabidopsis thaliana |
transcript | AT5G27395.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTATATGAAGGCCCCAGCGTCAATACACATTTGCTTCGATCTACAATG ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTAEST: gi|125199916|gb|EL214870.1|EL214870
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTA
EST: GATCTACAATG ATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTACTGCTACAACGCAEST: gi|86015126|gb|DR310872.1|DR310872
genomic: GATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGT-CTGCTACAACGCA
EST: GTTTATATGAAGGGCACAACGTCAATACACATTTGCTTCGATCTACAATG ATTGCAGAGTCTTTACCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
genomic: GTTTATATGAAGGCCACAGCGTCAATACACATTTGCTTCGATCTACAATGgtaataatca ... tgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAA
aaatcattgatctttggtttgaatcatatatacatgatttggtgttgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAAGTTAAGGCTCCACCTCAGCTACAGAAAACG
cattgat putative branch site (score: 4)
tttgaatcatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatcatcagattcatcattaggtgttgaaatcattgatctttggtttgaatcatatatacatgatttggtgttgtttatcagATTGCAGAGTTTTTGCCGTTTATGAATGAAAAAAGGTCTGCTACAACGCAAGTTAAGGCTCCACCTCAGCTACAGAAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT