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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAAGACAAAGATTACGATCCGCAACATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATgtaaatctcgatcttgttcgatctctatttttggtggaattgagattgttaattaggtcaaaaattcgtgattgtattag

Basic information

species Arabidopsis thaliana
transcript AT5G27280.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125274239|gb|EL288324.1|EL288324
EST:     CTTCCGGAATCGAACTCTCTCCAAT                         GATGAAGCAATGGGACTGGTGTTGAGCGCAGCTTCGGTTAAAGGATGGAAC
genomic: CTTCCGGAATCGAACTCTCTCCAATgtaaatctcg ... attgtattagGATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGA-C
EST: gi|86014973|gb|DR310719.1|DR310719
EST:     ATTCCGAATCGAACTCACCAAGCCTCTTCCGGAATCGAATTCTCTCCAAT                         GATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACA
genomic: ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATgtaaatctcg ... attgtattagGATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACA
EST: gi|86077887|gb|DR373644.1|DR373644
EST:     ATTCCGAATCGAACTCACCAAGCCTCTTCCGGAATCGAATTCTCTCCAAT                         GATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACA
genomic: ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATgtaaatctcg ... attgtattagGATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACA
EST: gi|163979472|gb|ES116113.1|ES116113
EST:     ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAAT                         GATGAAGCAATGGGATTGGTGTTGAGT
genomic: ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATgtaaatctcg ... attgtattagGATGAAGCAATGGGACTGGTGTTGAGT
EST: gi|124959432|gb|EL034136.1|EL034136
EST:     ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAGTCGAACTCTCTCCAAT                         GATGAAGCAATGGGACTGGT
genomic: ATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATgtaaatctcg ... attgtattagGATGAAGCAATGGGACTGGT