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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattcccttttctctattctcctgctattgctaaccgctaggcctatagattcaattgttgaacaagatgtcttctgttaaaaatgtctgaactctgtgagcttgtttaatccttttaacatatgccattttactgaagacggcttgttcatatgggctttgtttcgacagGTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGATTCCAACCTGTATCCGCTAT

Basic information

species Arabidopsis thaliana
transcript AT5G27230.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458573|gb|EG501165.1|EG501165
EST:     TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAG                         GTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAGACT
genomic: TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAGgttattccct ... gtttcgacagGTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAGACT
EST: gi|116458539|gb|EG501131.1|EG501131
EST:     TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAG                         GTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAG
genomic: TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAGgttattccct ... gtttcgacagGTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAG
EST: gi|116458639|gb|EG501231.1|EG501231
EST:     TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGAGGACGCCATTCCAG                         GTTTCATTCAAAATTTCATAAAAACTGGACATCGTATCAAGGCAATAGACT
genomic: TGTGTCTCCTGATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAGgttattccct ... gtttcgacagGTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacatatgccattttactgaagacggcttgttcatatgggctttgtttcgacagGTTTCATTCAAAATCTCATAAAAACTGGACATCGTATCAAGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGATTCCAACCTGTATCCGCTAT
 ttttaac  putative branch site (score: 2)
                                         ctttgtttc  putative PPT
           attttact  TA-rich tract