1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaagtcctcaagatttataaagcttttcttgatttagtataatgagaaaactaaatgtttttattgtatgattgatgaatggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACAGTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGG
species | Arabidopsis thaliana |
transcript | AT5G26770.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGG GCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTEST: gi|164079213|gb|ES075311.1|ES075311
genomic: TAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGGgtaaagtcct ... tggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACT
EST: GTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGG GCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTEST: gi|86085086|gb|DR380845.1|DR380845
genomic: GTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGGgtaaagtcct ... tggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACT
EST: TAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGG GCGGGGGAGAGACGAGMCAAGGCAATCAAAGAGCTAAGTGATCAGATTACT
genomic: TAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGGgtaaagtcct ... tggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACT
tagtataatgagaaaactaaatgtttttattgtatgattgatgaatggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACAGTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGG
aaaactaaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtcctcaagatttataaagcttttcttgatttagtataatgagaaaactaaatgtttttattgtatgattgatgaatggaacgcagGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACAGTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA