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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatttgctctcagtattgatggagtttcttatgtttgtgtcatagtcatgtttatcttaacaagctaatttcttttaatcagATAAAGAAGGACAAAATTACTAGACTTGTTGTACTGCCATTGTATCCTCAGTATTCTATCTCTACAACGGGTTCAAGCATACGCGTTCTCCAAGATTTAT

Basic information

species Arabidopsis thaliana
transcript AT5G26030.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501183|gb|HO206723.1|HO206723
EST:     ATGTTGGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAG                         ATAAAGAAAGACAAAATTACTAGACTTGTTGTACTGCCATTGGTATCCCTC
genomic: ATGTTGGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAGgtgtgatttg ... ttttaatcagATAAAGAAGGACAAAATTACTAGACTTGTTGTACTGCCATTG-TATCC-TC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgtttgtgtcatagtcatgtttatcttaacaagctaatttcttttaatcagATAAAGAAGGACAAAATTACTAGACTTGTTGTACTGCCATTGTATCCTCAGTATTCTATCTCTACAACGGGTTCAAGCATACGCGTTCTCCAAGATTTAT
                                         tttctttt  CT-rich tract
                                      taatttcttttaatca  TA-rich tract