1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttacattcttagcaaaaaaaaagaaaaaaaaactatattagttattgacaatctaaacaatttgagtagctaataagtctttgtcatgttgttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAGAGAGCTTAGGTTTAGAAAAAGATTACATGAAG
species | Arabidopsis thaliana |
transcript | AT5G24530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAA GGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATEST: gi|116456364|gb|EG498956.1|EG498956
genomic: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAgtaagcactt ... gttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAAT
EST: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAA GGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATEST: gi|86054490|gb|DR350247.1|DR350247
genomic: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAgtaagcactt ... gttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAAT
EST: CCTATCCACAAGTACGTCCATGAGTGGCCTTCAAACCCTCCTTCTTTCAA GGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATEST: gi|86054492|gb|DR350249.1|DR350249
genomic: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAgtaagcactt ... gttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAAT
EST: CCTATCCACAAGTACGTCCATGAGTGGCCTTCAAACCCTCCTTCTTTCAA GGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATEST: gi|124860845|gb|EH945282.1|EH945282
genomic: CCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAgtaagcactt ... gttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAAT
EST: CAAACCCTCCTTCTTTCAA GGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAA-T
genomic: CAAACCCTCCTTCTTTCAAgtaagcactt ... gttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAAT
tgacaatctaaacaatttgagtagctaataagtctttgtcatgttgttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAGAGAGCTTAGGTTTAGAAAAAGATTACATGAAG
taaacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacattcttagcaaaaaaaaagaaaaaaaaactatattagttattgacaatctaaacaatttgagtagctaataagtctttgtcatgttgttgttgcagGGAAATAGTAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAGAGAGCTTAGGTTTAGAAAAAGATTACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - caaaaaa
- - - - - - - - - -aaagaaa
- - - - - - - - - - - - - aaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaca