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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatctcaagaagcttgcttaatttagtaacattattattagtaatcttaatagttaaatttaccataatttgtaagctcaaatgtgtctacgtgtgatatatataactttatattcaccaatgtgggggattaagaaaaacgttttagtaataagcttattgtttatgtgatttaagGTTAAGGTTAATGGAGTATGATTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGTGTTTTTCTTGGGAATCTTT

Basic information

species Arabidopsis thaliana
transcript AT5G24130.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878455|gb|AU239286.1|AU239286
EST:     GCCGTGAATGTTCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCG                         GTTAAGGTTAATGGAGTATGATTTGCAACTGGGGCTAGTGGAATTTGCAGT
genomic: GCCGTGAATGTTCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCGgtaaatgatc ... gtgatttaagGTTAAGGTTAATGGAGTATGATTTGCAACTGGGGCTAGTGGAATTTGCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgggggattaagaaaaacgttttagtaataagcttattgtttatgtgatttaagGTTAAGGTTAATGGAGTATGATTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGTGTTTTTCTTGGGAATCTTT
                                        tttatgtgatttaa  TA-rich tract