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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattccttcaactttgttgttatttagtcatctgctagcttttctttttgaattaccgagttatctgacaaatactaaatccatcagTCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGATTTGCGTAATGGCTCTTGCGGGTCTCAGTTCTCCGAGGCATTCCTTTGCT

Basic information

species Arabidopsis thaliana
transcript AT5G23395.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877588|gb|AU238419.1|AU238419
EST:     AAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAG                         TCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGAT
genomic: AAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAGgttattcctt ... aatccatcagTCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGAT
EST: gi|86063587|gb|DR359344.1|DR359344
EST:     AAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAG                         TCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGAT
genomic: AAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAGgttattcctt ... aatccatcagTCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagcttttctttttgaattaccgagttatctgacaaatactaaatccatcagTCTCTTGAAGCCAAAGCACAGAGAGCTCTCGATTGTCCTTGTATAGCAGATTTGCGTAATGGCTCTTGCGGGTCTCAGTTCTCCGAGGCATTCCTTTGCT
                                        tactaaa  putative branch site (score: 1)
       ttttctttttgaatta  TA-rich tract