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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattttgattccttactgtcactttttttcccgttgtttcttgcttatgaagatagcagtatacttcttaagaagtacgtggttgagtcaatctcagtgtgttacatatttgttttctgataaaaatgttctgactttggtattatagGGTTGGCTTCAATTCGGTATACCATTTGACTGATATACCTTCTTTTGTGAGTGGAAAATACGTGGTATTGTTTGATCCTCAAGGTGCTTATCTTCCAAAT

Basic information

species Arabidopsis thaliana
transcript AT5G23110.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23110.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g02160.t01 (Vitis vinifera), 3'ss of exon 1
gtataattttgattccttactgtcactttttttcccgttgtttcttgcttatgaagatagcagta-tacttcttaagaagtacgtggttgagtcaatctcagtgtgttacatatttgttttctgataaaaatgttctgactttggtattatagGGTTGGCTTCAATTCGGTATACCATTTGACTGATATACCTTCTTTTGTGAGTGGAAAATACGTGGTATTGTTTGATCCTCAAGGTGCTTATCTTCCAAAT
                                                   | |   | | || | |  || ||| |   |   |     | |||  ||      | | |  ||    |  ||||        |  ||  |||| | || |||||| |||||||| ||||| |||||||| |||||| | || |||||||| ||||| ||||| |||||||| ||||||||||| |||| ||| |||||||||
---------------------------------------------------taacatttgtagaactgtttgttatgctattt-tctcatattcacacttttctgggtgctcatcaagtccctgactctggattgatgg-tttgctcttttagGGTGGGCTTCAACTCGGTGTACCATTTAACTGATTTGCCCTCTTTTGTCAGTGGTAAATATGTGGTATTATTTGATCCTCAGGGTGTTTACCTTCCAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtgtgttacatatttgttttctgataaaaatgttctgactttggtattatagGGTTGGCTTCAATTCGGTATACCATTTGACTGATATACCTTCTTTTGTGAGTGGAAAATACGTGGTATTGTTTGATCCTCAAGGTGCTTATCTTCCAAAT
                                   ttctgac  putative branch site (score: 2)
            atatttgttttctgat  TA-rich tract