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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTCTTCCCGGCGGTGGTAATGATCTCAAGCGGATACGTTTCAGgtacgttactgtgcaccttacttcatcctacggttacgattgttttgttgactctgtttttcttatcgtacggttaggtttagtttggcttcgtcgttgc...

Basic information

species Arabidopsis thaliana
transcript AT5G20540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20540.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G07930.1 (Glycine max), 5'ss of exon 1
AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTCTTCCCGGCGGTGGTAATGATCTCAAGCGGATACGTTTCAGgtacgttactgtgcaccttacttcatcctacggttacgattgttttgttgactctgtttttcttatcgtacggttaggtttagtttggcttcgtcgt-tgc
||||||| || || ||||| || |||||||||||||| ||| | || |||||||| || |||||| | || || ||  ||||||| |||||||| |||||||||||    |  ||   |   ||     |  ||||   ||  ||||  | |    ||      |||    |  |   |||  ||   |||||  || |  
AAGAGCCGAAGGAGTGGGTGGCGCAGGTTGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTTCCCCGTGGCGGGAACCATCTCAAACGGATACGATTCAGgtacgtgctcggccaatgttaatcggttaattgttaatttttatttgcgggcaa-attcccaccatctcctgtatgttttttcttcttcttcgctgtatat

upper sequence: AT5G20540.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 3
AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTCTTCCCGGCGGTGGTAATGATCTCAAGCGGATACGTTTCAGgtacgttactgtgcaccttacttcatcctacggttacgatt-gttttgttgactctgttt-ttcttatcgta---cggttaggtttagtttggcttcgtcgttgc
| ||||| ||||| ||||| || ||||| |||||||| || ||||| |||||||| || |||||| | || || || ||||||||||| || || ||||||||| |  |||| | ||        | | |||||   |||| |||||   | || |   | ||     ||||   | ||||  ||  |||     |  ||     
ATGAGCCGAAAGAGTGGGTGGCCCAGGTCGAGCCCGGCGTGCTCATCACCTTCGTCTCCCTTCCCCGTGGAGGGAACGATCTCAAGCGCATTCGGTTCAGgtactt--ctgtcctccgattccatttcaacggtcttgatttgttttacagtctttacctgtttccgacgtatttccgttaactt--gttcaaggttttcagca-