1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcgcatcttaatcaccatctatctcctttcaatcattctatgttcccagattttgcgtctaacaacgactttttattgttttatctccatATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGTCATACAAG
species | Arabidopsis thaliana |
transcript | AT5G20250.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCTCTTCACAACAACAGCTTCGTATTCGCTCATCTTCTTCGCTTTCTG ATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGTEST: gi|86070205|gb|DR365962.1|DR365962
genomic: TCCCTCTTCACAACAACAGCTTCGTATTCGCTCATCTTCTTCGCTTTCTGgtatcgcatc ... ttatctccatATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGT
EST: TCCCTCTTCACAACAACAGCTTCGTATTCGCTCATCTTCTTCGCTTTCTG ATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGT
genomic: TCCCTCTTCACAACAACAGCTTCGTATTCGCTCATCTTCTTCGCTTTCTGgtatcgcatc ... ttatctccatATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGT
ttctatgttcccagattttgcgtctaacaacgactttttattgttttatctccatATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGTCATACAAG
gtctaac putative branch site (score: 2)
ctttttattgtttt putative PPT
actttttattgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgcatcttaatcaccatctatctcctttcaatcattctatgttcccagattttgcgtctaacaacgactttttattgttttatctccatATCTTGGAAATCGCAGGCATTGTTCGTCTACTCGAGGATTTCAATTTTGGTCATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT