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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccattttctcacttgtactctctaaataagttacagctcacttgaaatttgaaaccttgttgaggataattgctaaagttgaagtttttagttttatcaattccagaacttcgcatctatgtttggtgtggattaaaaaggttcttgcttttgttttaccccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G20040.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052818|gb|DR348575.1|DR348575
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
EST: gi|86052820|gb|DR348577.1|DR348577
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
EST: gi|86052816|gb|DR348573.1|DR348573
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
EST: gi|86052815|gb|DR348572.1|DR348572
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAWGGCCTTGATGTTGGATCAGCCAAGCCCATCAGATAGCGATAG
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCC-ATCAGATAGCGATAG
EST: gi|86052814|gb|DR348571.1|DR348571
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAAGGSCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
EST: gi|86052822|gb|DR348579.1|DR348579
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTRACTCCGTTCAG                         GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
EST: gi|86052817|gb|DR348574.1|DR348574
EST:     AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAG                         GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA
genomic: AGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGgtccattttc ... ccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgtttggtgtggattaaaaaggttcttgcttttgttttaccccaatcacagGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG
                          ttcttgcttttgtttt  CT-rich tract
                                 ttttgtttta  TA-rich tract