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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttccatttcaagttgacttgctcttattttaaattctcctcgtcttttattttacaattttcttttttgtcgacagTGTTCTCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G19530.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057352|gb|DR353109.1|DR353109
EST:     TATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAG                         TGTTCTCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACAC
genomic: TATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGgttttcttcc ... ttgtcgacagTGTTCTCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattttaaattctcctcgtcttttattttacaattttcttttttgtcgacagTGTTCTCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAAAG
            ttctcctcgtctttta  CT-rich tract
                     tcttttattttacaat  TA-rich tract