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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattttgtcaattattcttatgaaacaatatttttacttaaagttcatgtttattttgtatagttttgattactacaaatttcttgtagtgatattatatggtggagactaattagtaaaagttaaaacagGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGATGAGTTTATCTACCATGAATGTTTGATCCATCCCGCTCTCCTTTTCCATCCCAA

Basic information

species Arabidopsis thaliana
transcript AT5G19530.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125307490|gb|EL321575.1|EL321575
EST:     CTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAAAG                         GTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGA
genomic: CTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAAAGgtacattttg ... gttaaaacagGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttcttgtagtgatattatatggtggagactaattagtaaaagttaaaacagGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGATGAGTTTATCTACCATGAATGTTTGATCCATCCCGCTCTCCTTTTCCATCCCAA
                              gactaat  putative branch site (score: 2)
                               actaattagtaaaagt  TA-rich tract