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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTTCTTTCAAAGCTTTGGGGCATACCGTTTAACCAACTACCGAGCTATATCAGAGACGGGGGTGCTTGCTTTCTAAATATTGGTTCTAGAATAACAGgtagttgatgctaacgctttctgctccagtatctctgtttttttcctgtgtaacacgccaatttgggtatgacacag

Basic information

species Arabidopsis thaliana
transcript AT5G19380.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164213205|gb|ES079990.1|ES079990
EST:     ATCAGAGACGGGGGGTGCTTGCTTTCTAAATATTGGTTCTAGAATAACAG                         GATGCGAAGGGGCT
genomic: ATCAGAGACGGGGG-TGCTTGCTTTCTAAATATTGGTTCTAGAATAACAGgtagttgatg ... tatgacacagGATGCGAAGGGGCT
EST: gi|86085592|gb|DR381351.1|DR381351
EST:     TATCAGAGACGGGGGTGCTTGCTTTCTAAATATTGGTTCTAGAATAACAG                         GATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACATGG
genomic: TATCAGAGACGGGGGTGCTTGCTTTCTAAATATTGGTTCTAGAATAACAGgtagttgatg ... tatgacacagGATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACATGG