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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcataaattttggtggaatggcataggagttagcatcatttataagcagaagagaaacatttgtaatatacagaaccttgtttggctttgtcgatgcagTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCTTGGGGTGGCATCTACACTACCAAGGGGGTTTGTTGCAGGCACAATCATCCTTGTAGT

Basic information

species Arabidopsis thaliana
transcript AT5G19380.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085592|gb|DR381351.1|DR381351
EST:     CATCAAGATTTCATCTGCAGTTGTGTCGTCTCTGGCATCCACCGTTTCAG                         TGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCTTGGGGTGG
genomic: CATCAAGATTTCATCTGCAGTTGTGTCGTCTCTGGCATCCACCGTTTCAGgtacaaaact ... gtcgatgcagTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCTTGGGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagaagagaaacatttgtaatatacagaaccttgtttggctttgtcgatgcagTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCTTGGGGTGGCATCTACACTACCAAGGGGGTTTGTTGCAGGCACAATCATCCTTGTAGT
                                         ctttgtc  CT-rich tract
          aaacatttgtaatata  TA-rich tract