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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACCGGACCAGGATGGGAAGCGTTCTTGTAATAACAAGTTCTACAAGATCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCCTGCCTTTGTCGAGgtacccatttgtttgatgatatacagtttagaagtagctcatttcaatacgatcctcatctaatccttttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G18830.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125267679|gb|EL281764.1|EL281764
EST:     TCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCCTGCCTTTGTCGAG                         GTTGAAAATGAATCTGGCCTATCAAATTTCATACCTCT
genomic: TCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCCTGCCTTTGTCGAGgtacccattt ... ccttttgtagGTTGAAAATGAATCTGGCCTATCAAATTTCATACCTCT
EST: gi|164200578|gb|ES179103.1|ES179103
EST:     TCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCCTGCCTTTGTCGAG                         GTTGAAAATGAATCTGGCCTATCAAATTTCATACCTC
genomic: TCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCCTGCCTTTGTCGAGgtacccattt ... ccttttgtagGTTGAAAATGAATCTGGCCTATCAAATTTCATACCTC