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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttggtcttctttacatatcaagtcattaatcttcaagatgggcttttcttggtttcatctttggctgaaccttgtcgctctttgatgtaattacggctcagGAGAACGGTTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCGTTGCTGTCTCTTTCAGAGTCATCTGTCCCATGGGAGACTCCGACCAACA

Basic information

species Arabidopsis thaliana
transcript AT5G18260.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124777044|gb|EH866987.1|EH866987
EST:     CCAAATAGCTCAAATCCTCAATGCTTAAACGAG                         GAGAACGGTTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCG
genomic: CCAAATAGCTCAAATCCTCAATGCTTAAACGAGgtaattttgg ... tacggctcagGAGAACGGTTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggtttcatctttggctgaaccttgtcgctctttgatgtaattacggctcagGAGAACGGTTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCGTTGCTGTCTCTTTCAGAGTCATCTGTCCCATGGGAGACTCCGACCAACA
                                 ctttgat  putative branch site (score: 5)
                                      atgtaatta  TA-rich tract