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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATgtaagcatcattttttgtgttattgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaagggttc...

Basic information

species Arabidopsis thaliana
transcript AT5G16820.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16820.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G01190.1 (Glycine max), 5'ss of exon 1
CTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATgtaagcatcattttttgtgttattgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaagggttc-
|||||| || ||||  |  ||  | ||| | |  |   ||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||  |    | ||  |  ||  |||| ||  ||     |  | | || | |      |   ||   | |     ||   |  |    |  |  
CTTCGTTGTTTGGAACGTTCCCCAATTCACCACAGACATCTTGCCCAAACATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATgtgggcatcacatcacttttttctcccatcttatcttattattgcctt-ttgcttatgcaaaacccctcttaaaggagggattgctgttcttttcgactgg

upper sequence: AT5G16820.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G44330.1 (Glycine max), 5'ss of exon 1
CTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATgtaagcatca--------ttttttgtgttattgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaagggttc
||| || || ||||  |  ||  | ||| | |  |   ||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||        ||| |    | ||| |||  |||| ||  |     ||  || | || |  |  | |   ||    |  ||  | |  | |||        
CTTTGTTGTTTGGAACGTTCCCCAATTCGCCACAGACATCTTGCCCAATCATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATgtgggcatcacatcactttttctcccatcattatcatcttatcttatttcttcttcttcttcttcttcttcttcttcttatt-attattattat-tattgct------

upper sequence: AT5G16820.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv16s0039g01840.t01 (Vitis vinifera), 5'ss of exon 1
CTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATgtaagcatcat-tttttgtgtt--attgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaagggttc
||| || ||||||| ||  ||||||||||| |  |  || ||||||||||| ||||||||||| || ||||||||||| || || ||||| ||||||||||| ||  |    ||||||| ||  ||| |   | |  |  | | |   ||| |  |   | |||| |    | |  |||     |  || ||| |   |||  
CTTTGTTGTCTGGAATGTTCCGGAGTTCTCTAGAGACCTTTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGTTGAATACTTATgtgagtgtttcgtttttgttttcgatttttgttctgctgctgt-gctgttggttctgaatgcgtgatcgcttgtttggatttgtggaaattgtggtgtggt--

upper sequence: AT5G16820.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EDO97264 (Chlamydomonas reinhardtii), 5'ss of exon 3
CTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATgtaagcatcattttttgtgttattgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaagggttc
|||| |||||||||   |    |||||  |   |   ||  ||||   |||||||||||||||||||||||||  ||| ||  | ||| | ||||| || || ||   |        |  |||   |       ||         |  |  |   |  |  |  || | |  |  | |    |||  ||  |        
CTTCATCGTCTGGAAGCCTAGCGAGTTTGCAGCGAACCTGCTGCCTCTGTATTTCAAGCACAACAACTTCTCCTCCTTTGTGCGCCAGCTGAATACCTACgtgagtg-cgcgcgcgatagtatctgcgccaagcttc-------gtgcacagcgctgccaggagactaat--gaaaccgctctgacttgcag--------