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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttctggtagaagttgccactttggcatcttctcctgaaggcttcaatttttttttgactttacgttgtagtttctcgttcaatctgtgtgtttcttcaaatgaacttcccttccttcactttggttctggccagGATGGTTCCTGCAATGGTTTACAGCATTATGCCGCTCTTGGGAGAGACACA

Basic information

species Arabidopsis thaliana
transcript AT5G15700.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830303|gb|CK119987.1|CK119987
EST:     GAGACAGTTCTGTCACATATTCCTATACATCAG                         GATGGTTCCTGCAATGGTTTACAGCATTATGCCGCTCTTGGGAGAGACACA
genomic: GAGACAGTTCTGTCACATATTCCTATACATCAGgtactttctg ... ttctggccagGATGGTTCCTGCAATGGTTTACAGCATTATGCCGCTCTTGGGAGAGACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctgtgtgtttcttcaaatgaacttcccttccttcactttggttctggccagGATGGTTCCTGCAATGGTTTACAGCATTATGCCGCTCTTGGGAGAGACACA
                         cttcccttccttcact  CT-rich tract
               ttcaaat  TA-rich tract