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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctttcatttttcataatctttcctgttttgggtaatcaacataatgggaatgtctaaatgtagagtcttccttaaatgtaggatccttgttacactcattgatgtgatataacaattcttaggctctaatggttttttgatgttgttggttaatagGATCTGCGTGGATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCGAATTGTGTTAATGTATTACGCAAACTTCCT

Basic information

species Arabidopsis thaliana
transcript AT5G15050.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124860685|gb|EH945122.1|EH945122
EST:     AAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAG                         GATCTGCGTGGATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGG
genomic: AAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGgtgctttcat ... tggttaatagGATCTGCGTGGATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgatataacaattcttaggctctaatggttttttgatgttgttggttaatagGATCTGCGTGGATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCGAATTGTGTTAATGTATTACGCAAACTTCCT
     atataacaattctta  TA-rich tract