1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGTCCCTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTATCCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtatataaattatacaattccctttctctttctttcttttatcaacaagaatctaatatgtatacgtcgtaaaagggttttgagtatttgtaatt...
species | Arabidopsis thaliana |
transcript | AT5G14740.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCAEST: gi|152035748|gb|BP855522.2|BP855522
genomic: CAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCA
EST: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAEST: gi|152035330|gb|BP850738.2|BP850738
genomic: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCA
EST: GCAAAGGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACCTTCAAACTTG AAGTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAEST: gi|47828530|gb|CK118214.1|CK118214
genomic: GCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCA-CTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCA
EST: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAEST: gi|125273699|gb|EL287784.1|EL287784
genomic: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCA
EST: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCATACGAAGACGCCATCGAAGCTCTCAEST: gi|125154272|gb|EL184972.1|EL184972
genomic: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCA
EST: CAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTEST: gi|125006686|gb|EL078955.1|EL078955
genomic: CAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCT
EST: CTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGEST: gi|125078828|gb|EL141063.1|EL141063
genomic: CTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAG
EST: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTG AACTGAGAAGGATGGGAAACGAATCAT
genomic: CGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtata ... acttgcacagAACTGAGAAGGATGGGAAACGAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCCCTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTATCCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAGCCACTTCAAACTTGgtatagtatataaattatacaattccctttctctttctttcttttatcaacaagaatctaatatgtatacgtcgtaaaagggttttgagtatttgtaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT