1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattgggccgttctgtatttagtgtgttgtgatttatgtgatgtgagtatattatccatcaatacatatgttgatgtttattgaaaatttatgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC
species | Arabidopsis thaliana |
transcript | AT5G14740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|125188167|gb|EL203121.1|EL203121
genomic: CAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: TACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|125320088|gb|EL334173.1|EL334173
genomic: TACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: TCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|124891157|gb|EH970059.1|EH970059
genomic: TCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: AATACGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTAGGAAAACATTGTGGTGATAGGGCACAGEST: gi|125060843|gb|EL129520.1|EL129520
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGT-GGAAAACATTGTGGTGATAGGGCACAG
EST: AGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAEST: gi|47828530|gb|CK118214.1|CK118214
genomic: AGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAA
EST: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|124769564|gb|EH859694.1|EH859694
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: ACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|125024648|gb|EL096917.1|EL096917
genomic: ACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTEST: gi|124971641|gb|EL045387.1|EL045387
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGT
EST: GGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|125155133|gb|EL185412.1|EL185412
genomic: GGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: TCTTGCACCTTAAG GTGGAAAACATTGTGGTGTATAGGGCACAGTGCATGTGGTGGCATCAAGGGEST: gi|124952464|gb|EL027732.1|EL027732
genomic: TCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTG-ATAGGGCACAGTGCATGTGGTGGCATCAAGGG
EST: TGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGEST: gi|125151480|gb|EL183590.1|EL183590
genomic: TGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGG
EST: GTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGEST: gi|124905826|gb|EH979906.1|EH979906
genomic: GTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: GAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCGCAGTGCATGTGGTGGCATEST: gi|125202054|gb|EL217008.1|EL217008
genomic: GAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCAT
EST: GAATACGCTGTCTTGCACCTTAAG GTGGAAAACTATTGTGGTGATAGGGCACAGAGCATGTGGTGGCATCAAGGGEST: gi|125002035|gb|EL074304.1|EL074304
genomic: GAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAAC-ATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGG
EST: AATATGCAGGAGTTGGAG-CGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCACAGTGCATEST: gi|124962464|gb|EL036886.1|EL036886
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCAT
EST: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG GTGGAAAACATTGTGGTGATAGGGCAC
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCAC
agtatattatccatcaatacatatgttgatgtttattgaaaatttatgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC
tgttgat putative branch site (score: 4)
atatgttgatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgggccgttctgtatttagtgtgttgtgatttatgtgatgtgagtatattatccatcaatacatatgttgatgtttattgaaaatttatgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC
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