1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatacaactatactaatcttttctacgtcttccttatgacgtttttgttatcggtagagtgattattttcttggttttccgcttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG
species | Arabidopsis thaliana |
transcript | AT5G14060.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTCATTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAG GCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAEST: gi|116430984|gb|EG473576.1|EG473576
genomic: CCGTCATTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAGgtaatacaac ... cttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAA
EST: CCGTCATTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAG GCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAEST: gi|124927151|gb|EL004915.1|EL004915
genomic: CCGTCATTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAGgtaatacaac ... cttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAA
EST: TTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAG GCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTGACGTAGAAAGTATTGAA
genomic: TTGTGCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAGgtaatacaac ... cttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAA
tgacgtttttgttatcggtagagtgattattttcttggttttccgcttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG
ttttcttggttttccg CT-rich tract
attattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacaactatactaatcttttctacgtcttccttatgacgtttttgttatcggtagagtgattattttcttggttttccgcttttgttagGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA